Average Ratings 0 Ratings
Average Ratings 0 Ratings
Description
Bokeh simplifies the creation of standard visualizations while also accommodating unique or specialized scenarios. It allows users to publish plots, dashboards, and applications seamlessly on web pages or within Jupyter notebooks. The Python ecosystem boasts a remarkable collection of robust analytical libraries such as NumPy, Scipy, Pandas, Dask, Scikit-Learn, and OpenCV. With its extensive selection of widgets, plotting tools, and user interface events that can initiate genuine Python callbacks, the Bokeh server serves as a vital link, enabling the integration of these libraries into dynamic, interactive visualizations accessible via the browser. Additionally, Microscopium, a project supported by researchers at Monash University, empowers scientists to uncover new functions of genes or drugs through the exploration of extensive image datasets facilitated by Bokeh’s interactive capabilities. Another useful tool, Panel, which is developed by Anaconda, enhances data presentation by leveraging the Bokeh server. It streamlines the creation of custom interactive web applications and dashboards by linking user-defined widgets to a variety of elements, including plots, images, tables, and textual information, thus broadening the scope of data interaction possibilities. This combination of tools fosters a rich environment for data analysis and visualization, making it easier for researchers and developers to share their insights.
Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
API Access
Has API
Yes
API Access
Has API
No
Integrations
Google Maps
No
JavaScript
No
Python
No
Pricing Details
Free
Free Trial
No
Free Version
Yes
Pricing Details
No price information available.
Free Trial
No
Free Version
No
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Customer Support
Business Hours
No
Live Rep (24/7)
No
Online Support
Yes
Customer Support
Business Hours
Yes
Live Rep (24/7)
No
Online Support
Yes
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
No
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
Yes
Vendor Details
Company Name
Bokeh
Website
bokeh.org
Vendor Details
Company Name
10x Genomics
Founded
2012
Country
United States
Website
www.10xgenomics.com/support/software/loupe-browser/latest