Alternatives to Pluto

A cloud LIMS that tracks samples, tests results, and manages inventory for life science research, industrial QC labs, and biotech/NGS. Includes regulatory support for CLIA and HIPAA, Part 11 and ISO 17025. The quality, security, traceability, and traceability for samples is crucial to a lab's success. Laboratory professionals can use the Lockbox LIMS system to manage their samples. They have full visibility of every step of the sample's journey from accession to long-term storage. LIMS analysis is more than just tracking results. Lockbox's multilayered sample storage and location management functionality lets you define your lab's storage structure using a variety location options: rooms and storage units, shelves and racks, boxes and boxes.

Labguru, a cloud-based Electronic Lab Notebook, LIMS and Informatics Platform that offers a complete solution to life science research and industry, is secure and reliable. It records and manages laboratory data, inventory, molecular biology tools, and chemistry tools. This allows labs to run more efficiently and automates lab operations. Labguru allows scientists to design experiments and workflows. They can also capture structured and unstructured information, manage projects, and share their results. You can create custom-designed experiment templates and integrate protocols, SOPs and other cutting-edge features to improve data quality, streamline workflows, and reduce costs. Labguru is available via the cloud on desktops as well as mobile devices. Labguru is part Holtzbrinck Publishing Group. It serves more than 100,000 scientists from universities, research institutes, startups, and large pharma companies around the world.

SciNote is the top-rated platform among researchers in industry and academia. SciNote has been chosen by many of the top executive departments in the United States as their solution. SciNote allows you to organize your data however you want. It gives structure and context for all your notes, excel spreadsheets, tables, checklists, or pictures. It also includes lab inventory, compliance, & team management tools SciNote users save an average of 9 hours per week. Data research: 90% faster thanks to the fast search of all data. Reporting is 90% faster with SciNote's automatic generation of project reports. Templates: 80% faster replication of processes, experiments, and more with templates. Without SciNote, laboratory notebook tasks take 37 minutes to complete (experiment execution and some results). Type in your keyword, and SciNote will search all your projects, files, experiments and their contents. SciNote allows you to tag, notify and post comments to your team members, speeding up lab management and correspondence.

Cease the struggle with cloud infrastructure and unreliable informatics tools; begin uncovering biological insights immediately. The scientific exploration process is hindered by the disjointed nature of tools utilized by biology and bioinformatics teams. To address this issue, we developed a unified bioinformatics platform that bridges the gap between wet lab and dry lab operations in the cloud, enabling teams to expedite their research and development efforts. You can easily import raw data from your cloud, your service provider, or your team's instruments with minimal hassle. Create and implement tailored bioinformatics workflows in various programming languages without the frustration of complex infrastructure management. Effortlessly execute any workflow while maintaining a comprehensive log of every analysis performed. Our platform features ready-to-use interactive visualizations for NGS data that allow you to create point-and-click plots with ease. Additionally, Latch seamlessly integrates with your organization’s AWS S3, granting access to hundreds of terabytes of data within a user-friendly organic filesystem. You can define bioinformatics workflows and dynamically generate no-code interfaces using Python, with adjustable compute and storage options to suit your needs. This innovative approach not only streamlines the research process but also fosters collaboration among teams, ultimately leading to more impactful scientific discoveries.

Numerous organizations globally rely on IQVIA to accelerate the drug development process, guarantee the safety and quality of products, enhance commercial efficacy, deliver appropriate treatments to patients, and ultimately promote improved health outcomes by facilitating access to and delivery of healthcare. Transform your approach to clinical development by seamlessly integrating data, technology, and analytics to streamline your trials. The outcome? Quicker decision-making and minimized risks, enabling you to provide transformative therapies at a faster pace. With its expertise rooted in data, sophisticated analytics, and deep industry knowledge, IQVIA offers tailored capabilities to clients throughout the healthcare landscape. Stay informed by exploring the latest insights and updates from IQVIA's data scientists, healthcare professionals, researchers, and other industry experts on crucial topics that resonate with your interests. From emerging industry developments to practical applications of our capabilities, a wealth of information awaits you here. Engaging with this content also empowers you to stay ahead in a rapidly evolving healthcare environment.

Sapio Sciences delivers a cutting-edge AI-driven lab informatics platform that integrates Laboratory Information Management Systems (LIMS), Electronic Lab Notebooks (ELN), and a Scientific Data Cloud into one seamless ecosystem. It is tailored to advance scientific research, clinical diagnostics, drug discovery, and manufacturing through configurable, no-code solutions. The Sapio LIMS® automates complex workflows with full configurability, removing the need for programming. Sapio ELN® offers a flexible, adaptable electronic lab notebook that supports diverse experimental needs. The platform’s Scientific Data Cloud consolidates instrument and research data enterprise-wide, paving the way for AI-driven insights. By unifying these components, Sapio simplifies data management and boosts productivity across the lab lifecycle. The platform is accessible for a wide range of industries and research applications. It aims to reduce administrative burden and enhance collaboration within scientific teams.

Introducing IDBS Polar, the pioneering BioPharma Lifecycle Management (BPLM) platform that streamlines tedious manual operations, empowering you to carry out processes more effectively while gathering the essential data needed to speed up market entry by addressing significant hurdles in process design, optimization, scale-up, and technology transfer. This innovative platform features interactive data analytics tools, including a bioreactor comparison tool tailored for biopharma development scientists. IDBS Polar excels at securely overseeing drug progression through comprehensive workflows, seamless integration, and insightful data analysis. Its structured workflows are crafted to ease the complexities of the BioPharma Lifecycle, ensuring process-aware planning, design, and execution of complete bioprocess and analytical unit operations. Meaningful integrations enhance the relevance of your data, while rapid incorporation into your development ecosystem fosters automation and establishes a robust, process-centric data framework. In an industry where precision and efficiency are paramount, IDBS Polar stands out as a vital solution for modern biopharmaceutical development.

Seqera is an innovative bioinformatics platform crafted by the team behind Nextflow, aimed at optimizing and improving the oversight of scientific data analysis workflows. It provides a robust array of tools, such as the Seqera Platform for managing scalable data pipelines, Seqera Pipelines that grant access to a handpicked selection of open-source workflows, Seqera Containers to facilitate container management, and Seqera Studios that create interactive environments for data analysis. The platform is designed to integrate smoothly with a variety of cloud and on-premises systems, promoting reproducibility and compliance within scientific research. Users can incorporate Seqera into their existing infrastructures, including major cloud services like AWS, GCP, and Azure, all without the need for mandatory migrations. This flexibility allows for total control over data residency while enabling global scalability, ensuring that security and performance are never compromised. Furthermore, Seqera empowers researchers to enhance their analytical capabilities while maintaining a seamless operational flow within their established systems.

Scispot delivers a powerful lab informatics platform that transforms how life science labs operate. Through its configurable LabOS™ ecosystem, teams can select from a unified suite of tools covering ELN, LIMS, SDMS, QMS, and AI capabilities—all accessible through an intuitive no-code interface. Purpose-built for CROs, Diagnostic Labs, and Biotech R&D teams, Scispot addresses critical challenges in Sample Management, Freezer Management, and GxP Compliance. The platform seamlessly connects with 200+ lab instruments and 7,000+ applications, eliminating manual data entry while ensuring regulatory adherence. Scispot's AI-powered analytics convert experimental data into actionable insights, accelerating discovery timelines. With rapid implementation and a focus on user experience, Scispot enables 1000+ lab scientists and operators to standardize processes, maintain compliance, and focus resources on innovation rather than administrative overhead.

Outdated research and development software significantly hinders scientific innovation, causing delays in progress, fragmenting data into isolated systems, and erasing valuable institutional knowledge. In contrast, Benchling stands out as the premier cloud solution for life sciences R&D, facilitating the acceleration, measurement, and forecasting of research activities from the initial discovery phase through bioprocessing, all within a single platform. This comprehensive suite comprises seven seamlessly integrated applications designed to enhance R&D efficiency across various levels. With a focus on codeless configuration, open integration, and customizable dashboards, Benchling meets the unique needs of its users. Furthermore, its profound expertise in life sciences R&D and consulting guarantees long-term success for teams. As a cohesive R&D platform, Benchling allows researchers to minimize time spent on data entry and retrieval, enabling them to collaborate more effectively and advance their studies. Scientists, project managers, and executives alike can improve R&D productivity through enhanced visibility into experimental contexts, overall program performance, and resource allocation. Ultimately, embracing a modern R&D platform like Benchling can transform the way teams approach scientific discovery and innovation.

Efficiently generating reports for NGS-based clinical tests necessitates a well-established and sophisticated platform that can automatically prioritize variants, interpret clinical data, and create comprehensive reports. Strand Omics serves as a rapid, HIPAA-compliant cloud platform that enhances our clinical diagnostics efforts, having been refined over four years through the analysis of more than 10,000 clinical reports and numerous peer-reviewed studies. This platform integrates advanced bioinformatics algorithms with curated databases, intuitive visualization tools, and robust reporting features. It is designed with specialized workflows tailored for both rare inherited conditions and somatic tumor profiling assays. Additionally, the system boasts a library of over 10,000 somatic variants that have been curated for their oncogenic potential, alongside 100 genes selected for their druggability across various cancer types, as well as 500 drugs that have been validated for efficacy against multiple cancers. Furthermore, its comprehensive approach ensures that healthcare professionals have access to critical data, ultimately facilitating informed decision-making in patient care.

Precision, efficiency, and assurance. The integration of generative AI into the biopharmaceutical industry is here. This technology streamlines the arduous task of gathering, organizing, and analyzing extensive data sets. Achieve essential insights with complete assurance every single time. With our AI-driven platform for data handling and validation, you will keep your workflows organized effortlessly. Collect, process, and verify your data all from a single interface. Easily search through both public and private databases using key characteristics of drugs. Categorize drugs and clinical trials based on comprehensive patient demographics. Retrieve necessary data in straightforward language. Strengthen your conclusions by linking your findings to their original sources. Direct your focus towards creating valuable outputs from your data, bypassing the tedious manual sorting process. Our advanced language models empower researchers to conduct asset evaluations 4.8 times quicker than traditional methods. We provide access to an extensive index of over 38 million scientific articles, conference papers, and clinical trial data. With this system, you’ll have all the information you require at your fingertips, ensuring timely and informed decision-making. Additionally, our platform adapts to your unique needs, enhancing the research experience even further.

Geneious Prime enhances access to bioinformatics by converting raw datasets into intuitive visual representations that facilitate sequence analysis in a user-friendly manner. It offers straightforward sequence assembly along with the convenient editing of contigs. Users benefit from automatic gene prediction, motif identification, translation, and variant calling through its annotation features. It also allows for the genotyping of microsatellite traces using automated ladder fitting and peak calling, producing comprehensive tables of alleles. The platform showcases beautifully designed visualizations of annotated genomes and assemblies, presented in a customizable sequence view that enhances user experience. Furthermore, it supports powerful analyses of SNP variants, simplifies RNA-Seq expression evaluations, and assists in amplicon metagenomics. Users can also design and test PCR and sequencing primers while developing their own searchable primer database. Additionally, Geneious Biologics provides a versatile, scalable, and secure solution to optimize workflows for antibody analysis, enabling the creation of high-quality libraries and the selection of the most suitable therapeutic candidates. This integration of tools fosters greater efficiency and innovation in biological research.

ZONTAL stands out as a prominent provider of digital solutions tailored for the life sciences sector, focusing on optimizing laboratory workflows and speeding up research results through advanced analytics and data science. Their all-encompassing platform features a range of products aimed at improving data management, including the Digital Lab for connecting experts and data, Data Preservation for the protection of critical information, and the Life Science Analytics Platform for seamless integration of analytics into laboratory processes. By prioritizing data to be Findable, Accessible, Interoperable, and Reusable (FAIR), ZONTAL enables organizations to reduce the complexities of data handling, conduct real-time analyses, and tap into limitless analytical capabilities. This transformation not only enhances laboratory operations but also promotes innovation within the modern digital landscape, ensuring that organizations remain competitive and forward-thinking in their research endeavors.

The L7 Enterprise Science Platform (L7|ESP®) is a comprehensive platform designed to contextualize data and remove business silos through process orchestration. This all-in-one solution supports the digitalization of data and scientific processes within life sciences organizations. It includes native applications like L7 LIMS, L7 Notebooks, L7 MES, and L7 Scheduling. L7|ESP seamlessly integrates with third-party applications, lab instruments, and devices to consolidate all data into a unified model. Featuring a low-code/no-code workflow designer and numerous pre-built connectors, it ensures rapid implementation and full automation. Utilizing a single data model, L7|ESP enhances advanced bioinformatics, AI, and ML to provide new scientific and operational insights. L7|ESP addresses the data and lab management needs and challenges within the life sciences sector, specifically targeting: ● Research and Diagnostics ● Pharma and CDMO ● Clinical Sample Management Explore the L7 Resource Center for on-demand recordings, case studies, datasheets, and more: l7informatics dot com/resource-center

Collaborating closely with our in-house teams of chemists and biologists, as well as our clients, we create products that excel in both performance and scientific insight. Chemaxon's diverse product lineup includes ready-to-use solutions for researchers, backend resources for IT professionals, additional components for enhanced functionality, and seamless integrations that allow our technology to be accessed through third-party applications such as Microsoft Excel and KNIME. With a user base exceeding one million, Chemaxon has established itself as a leader in developing software that facilitates scientific innovation through advanced calculation, searching, and drawing capabilities. Our tools are extensively utilized in life sciences research and educational settings, serving a broad spectrum of industries, including numerous major pharmaceutical companies. We maintain a global presence with offices in Budapest, Basel, Boston, and San Diego, supported by a network of distributors worldwide. Our commitment to scientific excellence ensures that we remain at the forefront of technological advancements in the life sciences sector.

Scitara DLX™ provides a swift connectivity framework suitable for any instrument found within life science laboratories, all while operating on a cloud-based platform that is both compliant and auditable. As a versatile digital data infrastructure, Scitara DLX™ facilitates connections between various instruments, resources, applications, and software utilized in the lab. The comprehensive cloud system ensures that all data sources are interconnected, promoting seamless data movement across numerous endpoints. Consequently, researchers can concentrate on their scientific endeavors instead of being bogged down by data-related challenges. Moreover, DLX intelligently curates and corrects data as it is processed, fostering the creation of accurate and well-organized data models that are essential for enhancing AI and ML systems. This robust approach plays a vital role in advancing digital transformation strategies within the pharmaceutical and biopharmaceutical sectors. By unlocking valuable insights from scientific data, the platform accelerates decision-making processes in drug discovery and development, ultimately aiding in the expedited launch of new medications into the market. Additionally, the integration of such a sophisticated infrastructure not only streamlines workflows but also enhances collaboration among researchers, paving the way for innovative solutions in the life sciences field.

At Metabolon, we proudly provide the most extensive Level 1 library in the metabolomics field. Our unique library has been meticulously developed and refined over two decades, boasting more than 5,400 entries. The majority of these entries are classified as Level 1, comprising roughly 85% (around 4,600 entries); however, about 15% of the library consists of Level 2 entries (approximately 800 entries), which are categorized as such due to the unavailability of commercial standards necessary for Level 1 classification. Thanks to our unparalleled library size and exceptional annotation confidence, Metabolon offers precise and highly actionable insights tailored to our clients’ scientific or clinical needs. The applications of metabolomics span a broad spectrum of research areas, including soil health, nutritional studies, preclinical investigations, and clinical trials. Whether you're identifying trends within a population or fine-tuning an individual's treatment plan, metabolomics serves as a powerful tool to uncover crucial answers to pressing questions in various fields. With such extensive resources at your disposal, the potential for discovery is truly limitless.

The QIAGEN CLC Geneomics Workbench is a powerful tool that works for all workflows. It is easy to overcome data analysis challenges with cutting-edge technology, unique features and algorithms that are widely used by scientists in industry and academia. Bioinformatics software solutions that are user-friendly allow for comprehensive analysis and interpretation of your NGS data. This includes de novo assembly and transcriptome assembly, resequencing analysis, WES and targeted panel support, variant calling, variant calling, RNA–seq, ChIP–seq and DNA methylation analysis (bisulfite sequence analysis). You can analyze your RNA-seq (miRNA, smallRNA) and smallRNA (lncRNA), data using easy-to-use transcriptomics workflows that allow for differential expression analysis at both gene and transcript levels. QIAGEN CLC Genomics Workbench was designed to support a wide variety of NGS bioinformatics programs.

Correlation Engine serves as an engaging omics knowledgebase designed to situate private omics data within a rich biological framework alongside meticulously curated public datasets. Recognized as one of the most extensive biological databases globally, it offers life science researchers unparalleled access to an immense collection of high-quality whole-genome analyses, complemented by powerful scientific tools. This knowledgebase fosters groundbreaking discoveries by enabling the exploration of billions of data points sourced from standardized whole genome study analyses. It features an array of applications tailored for discerning biological context, a continuously expanding library of curated datasets, and versatility across various species and multi-omic datasets. Users can navigate through an intuitive graphical user interface that facilitates guided workflows, one-click applications, and application programming interfaces (APIs). By streamlining the transition from omic data to actionable insights, researchers can tap into over 25,000 multi-omics studies derived from more than 250,000 unique signatures that have undergone reanalysis, thereby enhancing their research capabilities even further.

Partek bioinformatics software offers robust statistical and visualization capabilities through a user-friendly interface that caters to researchers of varying expertise. This innovation allows users to navigate genomic data with unprecedented speed and ease, truly embodying our motto, "We turn data into discovery®." With pre-installed workflows and pipelines in a simple point-and-click format, even complex NGS and array analyses become accessible to all scientists. Our combination of custom and public statistical algorithms works seamlessly to transform NGS data into valuable biological insights. Engaging visual tools like genome browsers, Venn diagrams, and heat maps illuminate the intricacies of next-generation sequencing and array data with vibrant clarity. Additionally, our team of Ph.D. scientists is always available to provide support for NGS analyses whenever queries arise. Tailored to meet the demanding computational requirements of next-generation sequencing, the software also offers flexible options for installation and user management, ensuring a comprehensive solution for research needs. As a result, users can focus more on their research and less on technical challenges.

Sapio LIMS is an advanced laboratory information management system offering a unified no-code/low-code solution that streamlines laboratory workflows. Built on the Sapio Platform, which integrates LIMS, Electronic Lab Notebooks (ELN), and Scientific Data Management Systems (SDMS), it provides purpose-built solutions for scientific research and discovery, manufacturing, and clinical diagnostics. Sapio LIMS helps to optimize laboratory operations, seamlessly integrating with lab instrumentation and existing IT infrastructure. Through its robust, scalable architecture, Sapio LIMS enhances operational efficiency and ensures compliance with GxP standards such as GMP and GLP. Solutions are available for Life Sciences R&D, Clinical Diagnostics, Lab Operations and Analytics and Enterprise Data Management.

StarDrop™, a comprehensive suite of integrated software, delivers the best in silico technology within a highly visual interface. StarDrop™, which allows seamless flow between the latest data, predictive modeling, and decision-making regarding the next round or synthesis, improves the speed, efficiency and productivity of the discovery process. A balance of different properties is essential for successful compounds. StarDrop™, which guides you through the multi-parameter optimization challenge, helps you target compounds with the highest chance of success. It also saves you time and resources by allowing you to synthesize fewer compounds and test them less often.

The Bioconductor initiative is dedicated to creating and distributing open-source software for the accurate and reproducible analysis of biological data. We promote a welcoming and cooperative environment for developers and data scientists alike. Our resources are designed to unlock the full potential of Bioconductor. From foundational tools to sophisticated functionalities, our extensive tutorials, guides, and documentation cater to all user needs. Utilizing the R programming language, Bioconductor embraces both open-source principles and collaborative development. It features biannual releases and boasts a vibrant user community. Additionally, Bioconductor offers Docker images for each release and facilitates its integration within AnVIL. Established in 2001, Bioconductor has become a prominent open-source project within the realms of bioinformatics and biomedical research. It encompasses over 2,000 R packages contributed by upwards of 1,000 developers and experiences more than 40 million annual downloads. Furthermore, Bioconductor has been referenced in over 60,000 scientific publications, underscoring its significant impact on the research community. The ongoing growth and evolution of Bioconductor continue to support advancements in biological data analysis.

Eidogen-Sertanty's Target Informatics Platform (TIP) stands out as the pioneering structural informatics system and knowledgebase that empowers researchers to explore the druggable genome through a structural lens. By harnessing the burgeoning wealth of experimental protein structure data, TIP revolutionizes structure-based drug discovery, shifting it from a limited, low-throughput field to a dynamic and data-rich scientific discipline. It is specifically designed to connect the realms of bioinformatics and cheminformatics, providing drug discovery scientists with a repository of insights that are not only unique but also highly synergistic with the information available from traditional bio- and cheminformatics tools. The platform's innovative combination of structural data management with advanced target-to-lead calculation and analytical capabilities significantly enhances every phase of the drug discovery process. With TIP, researchers are better equipped to navigate the complexities of drug development and make informed decisions.

Enhance research outcomes while boosting team efficiency by utilizing interactive data visualization to extend both private and public datasets among various teams. Rosalind stands out as the sole multi-tenant SaaS platform tailored for scientists, enabling the analysis, interpretation, sharing, planning, validation, and generation of new hypotheses with ease. It offers code-free visualization and employs AI for interpretation, fostering top-tier collaboration among users. Regardless of their expertise, scientists can leverage ROSALIND effectively, as it requires no programming or bioinformatics knowledge. The platform serves as a robust discovery tool and data hub, seamlessly integrating experiment design, quality control, and pathway analysis. ROSALIND's advanced infrastructure automatically orchestrates tens of thousands of compute cores and manages petabytes of storage, scaling resources dynamically for each experiment to ensure timely results. Furthermore, scientists can effortlessly share their findings with peers worldwide, complete with audit tracking to prioritize interpretation over data processing, thereby fostering a more collaborative research environment. This unique combination of features empowers researchers to focus on innovation and scientific discovery.

Transform your single-cell RNA sequencing data into actionable insights using Cellenics software, which is hosted by Biomage as a community instance of this open-source analytics tool developed at Harvard Medical School. This platform empowers biologists to delve into single-cell datasets without the need for coding, while facilitating collaboration between scientists and bioinformaticians. Within just a few hours, it can convert count matrices into publication-ready figures, integrating effortlessly into your existing workflow. Cellenics is designed to be fast, interactive, and user-friendly, as well as being cloud-based, secure, and scalable to meet various research needs. The community instance provided by Biomage is available at no cost for academic researchers working with smaller to medium-sized datasets, accommodating up to 500,000 cells. Currently, over 3000 academic researchers engaged in studies related to cancer, cardiovascular health, and developmental biology are utilizing this powerful tool. This collaborative environment not only enhances research capabilities but also accelerates the discovery process in various scientific fields.

Qlucore Omics Explorer is designed to be user-friendly, eliminating the necessity to rely on bioinformatics experts for the exploration and analysis of your Omics and NGS datasets. This software serves as a do-it-yourself solution for next-generation bioinformatics in life sciences, plant and biotechnology sectors, and educational institutions. It features a robust and adaptable visualization-based data analysis tool that incorporates advanced statistical methods, yielding instant results and enabling immediate exploration and visualization of extensive data sets. Built to accommodate workflows that align with your research needs, it enhances the effectiveness of your studies. By merging real-time visualization with sophisticated statistical techniques and flexible selection options, you can promptly observe your findings. As a user, you have the autonomy to determine your own workflow and starting point, allowing for a customized exploration that aligns with your unique requirements. This level of control empowers researchers to tailor their analyses, ensuring that the software adapts seamlessly to diverse experimental designs.

BC platforms harnesses cutting-edge scientific advancements, innovative technological capabilities, and strategic alliances to transform drug discovery and tailor healthcare solutions. Our platform is modular and highly adaptable, designed for integrating healthcare data effectively. With an open analytics framework, we seamlessly merge the most recent innovative methods and technology advancements into a single, cohesive platform. We prioritize security, holding ISO 27001 certification alongside compliance with GDPR and HIPAA regulations. Our comprehensive product suite empowers a contemporary healthcare system to fully adopt personalized medicine approaches. Our scalable deployment options support everything from initial setups to expansive healthcare operations. By offering a unique end-to-end toolbox, we facilitate the expedited application of research findings in clinical settings. Moreover, we strive to minimize your risks, enhance the value of your pipeline, and advance your enterprise data strategy by overcoming data access challenges and enabling swift insights. In doing so, we aim to foster a health ecosystem that is both responsive and forward-thinking.

OmicsBox, a leading bioinformatics tool, offers end-toend data analysis for genomes, transcriptomes and metagenomes. It also provides genetic variation studies. The application, which is used by leading private and public research institutes worldwide, allows researchers to process large and complicated data sets and streamline their analytical process. It is designed to be efficient, user-friendly and equipped with powerful tools to extract biological insight from omics data. The software is divided into modules, each of which has a set of tools and features designed to perform specific types of analyses, such as de novo genome assemblies, genetic variations analysis, differential expression analyses, taxonomic classifications, and taxonomic classes of microbiome, including the interpretation of results and rich visualizations. The functional analysis module uses the popular Blast2GO annotating methodology, making OmicsBox a great tool for non-model organisms research.

Dotmatics is the global leader in R&D scientific software that connects science, data, and decision-making. More than 2 million scientists and 10,000 customers trust Dotmatics to accelerate research and help make the world a healthier, cleaner, and safer place to live.

ScienceDesk's data automation simplifies the integration of artificial intelligence within the field of materials science. This tool serves as a practical solution for teams to consistently implement and utilize the latest AI algorithms in their daily workflows. It features customizable attributes, universal identifiers, QR codes, and a robust search engine that connects sample data with experimental results. As a groundbreaking platform, ScienceDesk facilitates collaboration among scientists and engineers, allowing them to engage with and glean insights from their experimental findings. However, the full potential of this resource remains untapped due to the diverse data formats and a reliance on specialists to manually retrieve targeted information. The ScienceDesk research data management system addresses this challenge by merging documentation with data analysis within a thoughtfully designed data structure. Our algorithms empower researchers and scientists, granting them comprehensive command over their data. They can not only exchange datasets but also share their analytical expertise, fostering a more collaborative research environment. Overall, ScienceDesk enhances data accessibility and encourages innovative approaches in scientific investigation.

Geneyx Analysis offers an all-encompassing solution for managing next-generation sequencing (NGS) data, efficiently transforming FASTQ files into clinical reports tailored for both hospital and commercial laboratories. This cutting-edge platform incorporates machine learning and artificial intelligence capabilities to uncover new biomedical insights, enhancing diagnostic efficiency and reducing turnaround times. By delivering a fully transparent and user-friendly interface, Geneyx Analysis empowers clinicians and researchers with complete control over data interpretation and simplifies the challenges associated with managing in-house bioinformatics workflows. Users can customize protocols to suit various gene panels, exomes, and genomes, while our extensive annotation engine facilitates the analysis of all genetic variants, including structural and copy number variations, as well as regulatory elements. In combination, Geneyx Analysis streamlines the diagnostic journey from sequencer output to finalized report, while also serving as a valuable resource for the discovery of novel variants. This platform not only enhances clinical capabilities but also paves the way for groundbreaking research in genomics.

The innovative XetaBase platform streamlines tertiary analysis by aggregating, indexing, and enriching secondary genomic data, which facilitates ongoing re-evaluation to reveal valuable insights for research and clinical applications. By enhancing data management practices, XetaBase allows for the economical utilization of genomic information both in laboratories and clinical settings. The platform is designed to handle expansive genomic datasets, where increased volume and complexity lead to improved insights and outcomes. Built on the open-source OpenCB software framework, XetaBase is a genomic-native technology that addresses the demands for scalability, speed, and innovative re-interpretation in genomic medicine. Zetta Genomics provides an advanced genomic data management solution tailored for the era of precision medicine. This transformative platform eliminates outdated flat file methods, introducing actionable and relevant genomic data into both laboratory and clinical environments. Furthermore, XetaBase not only supports ongoing re-interpretation but also adapts effortlessly as databases expand to include more comprehensive genome sequences, ensuring that users stay at the forefront of genomic advancements.

Leverage the capabilities of biomedical data through the Polly Platform, which is designed to enhance the scalability of batch jobs, workflows, coding environments, and visualization tools. By facilitating resource pooling, Polly optimally allocates resources according to your specific usage needs and leverages spot instances whenever feasible. This functionality contributes to increased optimization, improved efficiency, quicker response times, and reduced costs associated with resource utilization. Additionally, Polly provides a real-time dashboard for monitoring resource consumption and expenses, effectively reducing the burden of resource management on your IT department. An essential aspect of Polly's framework is its commitment to version control, ensuring that your workflows and analyses maintain consistency through a strategic combination of dockers and interactive notebooks. Furthermore, we've implemented a system that enables seamless co-existence of data, code, and the computing environment, enhancing collaboration and reproducibility. With cloud-based data storage and project sharing capabilities, Polly guarantees that every analysis you conduct can be reliably reproduced and verified. Thus, Polly not only optimizes your workflow but also fosters a collaborative environment for continuous improvement and innovation.

Choose two tailored cell groups by utilizing metadata to uncover their most significantly differentially expressed genes. Utilize the extensive collection of millions of cells from the integrated CZ CELLxGENE corpus for in-depth analysis. Conduct interactive examinations of datasets to investigate how gene expression patterns are influenced by spatial, environmental, and genetic variables through an intuitive no-code user interface. Gain insights into existing datasets or leverage them as a foundation to discover new cell subtypes and states. Census offers the capability to access any customized segment of standardized cell data available within CZ CELLxGENE, with opportunities for exploration in both R and Python. Delve into an interactive encyclopedia containing over 700 cell types that includes comprehensive definitions, marker genes, lineage information, and associated datasets all in one location. Additionally, you can browse and obtain hundreds of standardized data collections along with more than 1,000 datasets that detail the functionality of both healthy mouse and human tissues, enriching your research and understanding of cellular biology. This resource provides a valuable tool for researchers aiming to enhance their exploration of cellular dynamics and gene expression.

NuVerve is a collaborative SaaS that offers Scientific Data Intelligence for scientists. It provides a set easy-to-use features to structure data, create custom analyses, and automatically generate reports. NuVerve, priced at $75/month, is available to all scientists.

Delve into a vast collection of meticulously curated single-cell transcriptome datasets, as well as your own, using dynamic visualizations and analytical tools. This software is versatile, accommodating multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomics. Engage with the most extensive single-cell expression database globally, where you can access and extract insights from a repository featuring millions of fully annotated cells complete with cell type labels and experimental metadata. Beyond merely serving as a conduit to published research, BioTuring Browser functions as a comprehensive end-to-end solution tailored for your specific single-cell data needs. Easily import your fastq files, count matrices, or Seurat and Scanpy objects to uncover the biological narratives contained within. With an intuitive interface, you can access an extensive array of visualizations and analyses, transforming the process of extracting insights from any curated or personal single-cell dataset into a seamless experience. Additionally, the platform allows for the importation of single-cell CRISPR screening or Perturb-seq data, enabling users to query guide RNA sequences with ease. This functionality not only enhances research capabilities but also facilitates the discovery of novel biological insights.

The immune system is essential for our biological processes, acting as a shield against illnesses and maintaining internal balance by fending off external threats like pathogens. Each individual's immune composition is unique and continually adapts over time, and by thoroughly mapping and examining this intricate system, we can gain valuable insights that propel research forward and lead to improved treatments for everyone. Unfortunately, the analysis of single-cell data has historically not kept pace with the advancements in technology that produce this data. Traditional manual workflows, which are constrained by their resolution and speed, limit the amount of cellular information that can be accessed. As medicine increasingly moves towards precision treatments, many cutting-edge therapies are being developed using the patient's own immune cells. Our AI-enhanced computational analysis tools are designed to reveal critical insights that facilitate the discovery and progression of innovative therapies, ultimately benefiting patient care. This ongoing evolution in our understanding of the immune system and its complexities is vital for shaping future medical breakthroughs.

Galaxy serves as an open-source, web-based platform specifically designed for handling data-intensive research in the biomedical field. For newcomers to Galaxy, it is advisable to begin with the introductory materials or explore the available help resources. You can also opt to set up your own instance of Galaxy by following the detailed tutorial and selecting from a vast array of tools available in the tool shed. The current Galaxy instance operates on infrastructure generously supplied by the Texas Advanced Computing Center. Furthermore, additional resources are mainly accessible through the Jetstream2 cloud, facilitated by ACCESS and supported by the National Science Foundation. Users can quantify, visualize, and summarize mismatches present in deep sequencing datasets, as well as construct maximum-likelihood phylogenetic trees. This platform also supports phylogenomic and evolutionary tree construction using multiple sequences, the merging of matching reads into clusters with the TN-93 method, and the removal of sequences from a reference that are within a specified distance of a cluster. Lastly, researchers can perform maximum-likelihood estimations to ascertain gene essentiality scores, making Galaxy a powerful tool for various applications in genomic research.

Ruffus is a Python library designed for creating computation pipelines, known for being open-source, robust, and user-friendly, making it particularly popular in scientific and bioinformatics fields. This tool streamlines the automation of scientific and analytical tasks with minimal hassle and effort, accommodating both simple and extremely complex pipelines that might confuse traditional tools like make or scons. It embraces a straightforward approach without relying on "clever magic" or pre-processing, focusing instead on a lightweight syntax that aims to excel in its specific function. Under the permissive MIT free software license, Ruffus can be freely utilized and incorporated, even in proprietary applications. For optimal performance, it is advisable to execute your pipeline in a separate “working” directory, distinct from your original data. Ruffus serves as a versatile Python module for constructing computational workflows and requires a Python version of 2.6 or newer, or 3.0 and above, ensuring compatibility across various environments. Moreover, its simplicity and effectiveness make it a valuable tool for researchers looking to enhance their data processing capabilities.

Flywheel provides comprehensive data management solutions to researchers looking to improve productivity and collaboration in imaging research and clinical trials, multi-center studies, and machine learning. Flywheel provides end-to-end solutions that streamline data ingestion and curate it to common standards. We also automate processing and machine-learning pipelines. Our platform allows for secure collaboration in the life sciences, clinical, academic, as well as AI, industries. Cross-platform data and algorithm integration, secure and compliant data discovery among a global network, and cloud-scalable and on-premise computational workflows to support research and clinical applications. Flywheel is a data curation platform that supports multi-modality research. It can manage a wide range of data types, including digital pathology, imaging files, clinical EMR data and omics, as well as instruments.

Researchers require effective tools for the capture, management, and sharing of their research data. Additionally, these tools must be compatible with various data storage platforms and applications, including enterprise chat systems and specialized tools such as protocols.io, along with data repositories. RSpace, recognized as the Connected electronic notebook, stands out as the sole electronic lab notebook (ELN) tailored to integrate effortlessly into the research data framework of contemporary research-intensive universities. For early-stage biotech companies, there is a pressing need to advance swiftly toward their next milestone while also systematically capturing and organizing their research data. This organization is essential not only for establishing a solid foundation for long-term intellectual property protection but also for presenting results effectively to collaborators and potential investors. By connecting with various research tools and other elements of the research ecosystem, RSpace ensures that researchers' data is not only captured but also adeptly managed, ultimately making it accessible for public viewing, querying, and reuse by others in the scientific community. This holistic approach fosters a collaborative environment, enabling greater innovation and shared knowledge across the research landscape.

The Suite is designed to be both secure and scalable, featuring a contemporary and user-friendly interface that empowers scientists to have full control over the configuration of workflows for various techniques, modalities, and data types. The latest iteration, Signals VitroVivo 3.0, formerly known as Signal’s Screening, effectively converts raw data into practical insights, while Signals Inventa 3.0, previously called Signals Lead Discovery, serves as advanced analytics software that allows researchers to publish results effortlessly from diverse data sources. Additionally, it facilitates the capture of experimental data, oversees materials management, and streamlines collaboration workflows within an easy-to-navigate cloud-based electronic notebook. With adaptable visualizations and the ability to automate instrument data processing, the Suite enhances data quality and ensures reproducibility in research. It also provides a unified data management system for scientific outcomes, enriched with dynamic, interactive analytics. Furthermore, its extensibility allows for seamless integration with internal systems and partner processes, making it an invaluable tool for scientific discovery and innovation.

Streamline the entire selection process for reagents and model systems to eliminate costly inefficiencies and errors that lead to experimental failures. Accelerate project timelines by facilitating the selection of reagents and model systems in a mere 30 seconds, compared to the traditional 12-week duration. This transformation can significantly cut the hard costs associated with consumables, saving organizations millions annually. By restoring valuable research time to scientists, you can enhance the organization’s mission. Experience tangible business benefits from AI through a proven, ready-to-use application. More than 41,200 scientists across 15 of the leading 20 pharmaceutical companies, as well as over 4,450 academic institutions, leverage BenchSci’s AI-Assisted Antibody Selection to design more effective experiments, resulting in documented savings of millions per year in hard costs alone. However, it's important to note that antibodies account for only 40-50% of reagent-related failures. Access a comprehensive array of experimental evidence, along with catalog data for reagents and model systems, all within one user-friendly interface. This platform integrates real-world experiment data sourced from 11.2 million scientific publications, including those published in closed-access journals, providing an unparalleled resource for researchers. With this level of detailed information, scientists can make informed decisions that significantly enhance their research outcomes.