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features
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support

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Description

Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.

Description

Introducing an innovative reactive notebook designed for Python, which allows you to conduct repeatable experiments, run scripts seamlessly, launch applications, and manage versions using git. 🚀 Comprehensive: it serves as a substitute for jupyter, streamlit, jupytext, ipywidgets, papermill, and additional tools. ⚡️ Dynamic: when you execute a cell, marimo automatically runs all related cells or flags them as outdated. 🖐️ Engaging: easily connect sliders, tables, and plots to your Python code without the need for callbacks. 🔬 Reliable: ensures no hidden states, guarantees deterministic execution, and includes built-in package management for consistency. 🏃 Functional: capable of being executed as a Python script, allowing for customization via CLI arguments. 🛜 Accessible: can be transformed into an interactive web application or presentation, and functions in the browser using WASM. 🛢️ Tailored for data: efficiently query dataframes and databases using SQL, plus filter and search through dataframes effortlessly. 🐍 git-compatible: stores notebooks as .py files, making version control straightforward. ⌨️ A contemporary editor: features include GitHub Copilot, AI helpers, vim keybindings, a variable explorer, and an array of other enhancements to streamline your workflow. With these capabilities, this notebook elevates the way you work with Python, promoting a more efficient and collaborative coding environment.

API Access

Has API No 

API Access

Has API No 

Screenshots View All

Screenshots View All

No images available

Integrations

Python No 

Integrations

Python Yes 

Pricing Details

No price information available.
Free Trial No 
Free Version No 

Pricing Details

$0
Free Trial No 
Free Version Yes 

Deployment

Web-Based No 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux Yes 
Chromebook No 

Deployment

Web-Based Yes 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux Yes 
Chromebook No 

Customer Support

Business Hours Yes 
Live Rep (24/7) No 
Online Support Yes 

Customer Support

Business Hours No 
Live Rep (24/7) No 
Online Support No 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) No 
In Person Yes 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) No 
In Person No 

Vendor Details

Company Name

10x Genomics

Founded

2012

Country

United States

Website

www.10xgenomics.com/support/software/loupe-browser/latest

Vendor Details

Company Name

marimo

Founded

2022

Country

United States

Website

marimo.io

Product Features

Application Development

Access Controls/Permissions No 
Code Assistance No 
Code Refactoring No 
Collaboration Tools No 
Compatibility Testing No 
Data Modeling No 
Debugging No 
Deployment Management No 
Graphical User Interface No 
Mobile Development No 
No-Code No 
Reporting/Analytics No 
Software Development No 
Source Control No 
Testing Management No 
Version Control No 
Web App Development No 

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