Average Ratings 0 Ratings
Average Ratings 0 Ratings
Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
Description
Introducing an innovative reactive notebook designed for Python, which allows you to conduct repeatable experiments, run scripts seamlessly, launch applications, and manage versions using git.
🚀 Comprehensive: it serves as a substitute for jupyter, streamlit, jupytext, ipywidgets, papermill, and additional tools.
⚡️ Dynamic: when you execute a cell, marimo automatically runs all related cells or flags them as outdated.
🖐️ Engaging: easily connect sliders, tables, and plots to your Python code without the need for callbacks.
🔬 Reliable: ensures no hidden states, guarantees deterministic execution, and includes built-in package management for consistency.
🏃 Functional: capable of being executed as a Python script, allowing for customization via CLI arguments.
🛜 Accessible: can be transformed into an interactive web application or presentation, and functions in the browser using WASM.
🛢️ Tailored for data: efficiently query dataframes and databases using SQL, plus filter and search through dataframes effortlessly.
🐍 git-compatible: stores notebooks as .py files, making version control straightforward.
⌨️ A contemporary editor: features include GitHub Copilot, AI helpers, vim keybindings, a variable explorer, and an array of other enhancements to streamline your workflow.
With these capabilities, this notebook elevates the way you work with Python, promoting a more efficient and collaborative coding environment.
API Access
Has API
No
API Access
Has API
No
Screenshots View All
No images available
Integrations
Python
No
Pricing Details
No price information available.
Free Trial
No
Free Version
No
Pricing Details
$0
Free Trial
No
Free Version
Yes
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Deployment
Web-Based
Yes
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Customer Support
Business Hours
Yes
Live Rep (24/7)
No
Online Support
Yes
Customer Support
Business Hours
No
Live Rep (24/7)
No
Online Support
No
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
Yes
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
No
Vendor Details
Company Name
10x Genomics
Founded
2012
Country
United States
Website
www.10xgenomics.com/support/software/loupe-browser/latest
Vendor Details
Company Name
marimo
Founded
2022
Country
United States
Website
marimo.io
Product Features
Product Features
Application Development
Access Controls/Permissions
No
Code Assistance
No
Code Refactoring
No
Collaboration Tools
No
Compatibility Testing
No
Data Modeling
No
Debugging
No
Deployment Management
No
Graphical User Interface
No
Mobile Development
No
No-Code
No
Reporting/Analytics
No
Software Development
No
Source Control
No
Testing Management
No
Version Control
No
Web App Development
No