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Description
Created within the Data Sciences Platform at the Broad Institute, this comprehensive toolkit provides an extensive array of features primarily aimed at variant discovery and genotyping. With its robust processing engine and high-performance computing capabilities, it is equipped to manage projects of any magnitude. The GATK has established itself as the industry benchmark for detecting SNPs and indels in both germline DNA and RNA sequencing data. Its functionalities are now broadening to encompass somatic short variant detection as well as addressing copy number variations (CNV) and structural variations (SV). Besides the core variant callers, the GATK incorporates numerous utilities for executing associated tasks, including the processing and quality assurance of high-throughput sequencing data, and it comes bundled with the well-known Picard toolkit. Originally designed for exome and whole genome data generated via Illumina sequencing technology, these tools are versatile enough to be modified for use with various other technologies and study designs. As research evolves, the adaptability of the GATK ensures it remains relevant in diverse genomic investigations.
Description
Utilize GenomeStudio Software to visualize and analyze data produced on Illumina array platforms, which provides an advanced solution for genotyping microarray data. This robust toolset offers performance-enhanced capabilities and an intuitive graphical interface, allowing for swift and effortless transformation of data into insightful outcomes. You can examine SNP and CNV data through a comprehensive array of 5 million markers and probes, identify sample outliers, and investigate differentially expressed genes among various genomes. Additionally, it facilitates the profiling of miRNA expression and allows you to merge mRNA with microRNA data within a single project. The software also enables the detection of cytosine methylation at single-base resolution and helps in identifying methylation patterns throughout the genome. At Illumina, we are dedicated to leveraging groundbreaking technologies to advance the analysis of genetic variations and functions, paving the way for research that was once beyond reach. Our commitment is to provide innovative, adaptable, and scalable solutions that effectively address our customers' diverse needs. Ultimately, this focus on innovation ensures that we remain at the forefront of genetic research, facilitating discoveries that can transform our understanding of biology.
API Access
Has API
API Access
Has API
Pricing Details
Free
Free Trial
Free Version
Pricing Details
No price information available.
Free Trial
Free Version
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Vendor Details
Company Name
Broad Institute
Country
United States
Website
gatk.broadinstitute.org/hc/
Vendor Details
Company Name
Illumina
Founded
1998
Country
United States
Website
www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html
Product Features
Product Features
Data Analysis
Data Discovery
Data Visualization
High Volume Processing
Predictive Analytics
Regression Analysis
Sentiment Analysis
Statistical Modeling
Text Analytics